dmatch relies on the following R packages: Rcpp, RcppArmadillo, mvtnorm, RcppEigen, irlba. All packagess are hosted on CRAN.
install.packages("Rcpp") install.packages("RcppArmadillo") install.packages("mvtnorm") install.packages("RcppEigen") install.packages("irlba")
Install development version from GitHub:
install.packages("devtools") library(devtools) devtools::install_github("qzhan321/dmatch")
For a quick start, visit our website to see a detailed tutorial with examples and the references for functions in dmatch illustrating its usage at: https://qzhan321.github.io/dmatch/.
The complete analysis pipeline in the tutorial section is also included in this R script. Simply run:
R CMD BATCH ExamplePipeline.RAll the images and final corrected data will be generated in the current working directory.
If you have any enquires, especially about performing dmatch integration on your data, please create an issue at https://github.com/qzhan321/dmatch/issues.